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Synthesis of asymmetrical multiantennary human milk oligosaccharides

   日期：2021-08-07     来源：PANS    浏览：958    评论：0    
核心提示：尽管哺乳动物的聚糖通常具有高度复杂的不对称多天线结构、化学和化学酶合成几乎完全集中在简单对称结构的制备。这一缺陷妨碍了对聚糖结合蛋白生物学的研究反过来又使这类生物分子的生物医学应用复杂化。在此，我们描述了一种酶促策略，使用有限的用于访问集合的人类糖基转移酶的数量60种不对称、多触角母乳低聚糖（HMOs），用于开发聚糖微阵列。探查含有多个聚糖结合蛋白的阵列揭示了这一点不仅是末端糖表位，而且是复杂的结构聚糖可以以意想不到的方式影响结合选择性。 N-和O-连接的聚糖表达HMO的结构元素，以及因此，所报告的
  
 

Significance

Human breast milk is rich in a family of structurally diverse unconjugated glycans. These human milk oligosaccharides (HMOs) can shape the intestinal microbiome, serve as soluble decoys for receptors of pathogens, and have immune-modulatory properties. Virtually nothing is known about the importance of the molecular complexity of HMOs for binding and biological activity, which hampers exploitation of their biomedical potential. We have developed a synthetic approach that can provide highly complex, asymmetrical, multiantennary HMOs. These compounds have been used in the development of a glycan microarray, which makes it possible to examine the biology of individual compounds. Binding studies with the array uncovered that the complex architecture of HMOs greatly affects protein–glycan binding.

Abstract

Despite mammalian glycans typically having highly complex asymmetrical multiantennary architectures, chemical and chemoenzymatic synthesis has almost exclusively focused on the preparation of simpler symmetrical structures. This deficiency hampers investigations into the biology of glycan-binding proteins, which in turn complicates the biomedical use of this class of biomolecules. Herein, we describe an enzymatic strategy, using a limited number of human glycosyltransferases, to access a collection of 60 asymmetric, multiantennary human milk oligosaccharides (HMOs), which were used to develop a glycan microarray. Probing the array with several glycan-binding proteins uncovered that not only terminal glycoepitopes but also complex architectures of glycans can influence binding selectivity in unanticipated manners. N- and O-linked glycans express structural elements of HMOs, and thus, the reported synthetic principles will find broad applicability.

  • chemoenzymatic synthesis
  • glycosyltransferases
  • protein–glycan interactions
  • human milk oligosaccharides

Human breast milk is rich in a family of structurally diverse unconjugated glycans (1, 2). These compounds, which are the third largest component of breast milk, are not digested by the infant but serve as metabolic substrates for beneficial bacteria, thereby shaping the intestinal microbiome (3, 4). Human milk oligosaccharides (HMOs) also serve as soluble decoys for viral, bacterial, or protozoan parasite adhesins, thereby preventing attachment to the infant mucosal surface (5, 6). The fucosylated fraction of human milk, specifically structures containing H blood group epitopes, can inhibit Campylobacter jejuni colonization of mice in vivo and human intestinal mucosa ex vivo. HMOs can also modulate epithelial and immune cell responses and reduce excessive mucosal leukocyte infiltration and activation (7, 8). These properties have been associated with a lower risk for developing necrotizing enterocolitis (9).

Access to well-defined HMOs in sufficient quantity is a major obstacle for unraveling the biological mechanisms of action of these compounds and to exploit their biomedical potential (2, 10). Several simple HMOs are commercially available, and such compounds have been used in informative binding and biological studies (11, 12). Current strategies for obtaining more complex HMOs are cumbersome and rely on multidimensional chromatography of pooled breast milk (13) or laborious chemical or chemoenzymatic synthesis (14⇓⇓⇓⇓⇓⇓⇓–22) that cannot provide the highly complex asymmetrical glycans found in human milk.

The structural complexity of HMOs ranges from relatively simple glycans, such as lactose and sialyl- and fucosyl-lactose, to highly complex, multibranched structures having different appendages at each branching point (Fig. 1 A and B) (1). All HMOs have a reducing lactose moiety that can be extended by various numbers of lacto-N-biose (Galβ1,3GlcNAc, type 1 LacNAc) or N-acetyllactosamine (Galβ1,4GlcNAc, type 2 LacNAc) motifs. Branched HMOs are formed by the action of N-acetyllactosaminide β1,6-N-acetylglucosaminyltransferase (GCNT2), which installs a β1,6-linked N-acetyl-glucosamine (GlcNAc) at an internal galactosyl moiety that can be further extended by type 1 or type 2 structures. Repeated action of GCNT2 creates highly complex, multiantennary structures. The termini of the resulting oligosaccharide chains can be modified by various combinations of α1,2-, α1,3-, and α1,4-fucosylation and α2,3- and α2,6-sialylation, providing an array of Lewis structures and blood group antigens (Fig. 1B). The resulting multiantennary HMOs often have asymmetrical architectures in which each appendage is modified by a unique glycoepitope.

Fig. 1.

Structural diversity of HMOs. (A) Simple HMOs. (B) Structural diversity of multiantennary HMOs. (C) Enzymatic strategy for the synthesis of asymmetric multiantennary HMOs. (D) Example of a chemical structure of an asymmetric multiantennary HMO prepared by the enzymatic approach.

 

We envisaged that the redundant nature of HMO biosynthesis would offer an avenue to create an array of structurally diverse symmetrically and asymmetrically branched HMOs by exploiting inherent substrate specificities of a limited number of mammalian glycosyltransferases. We anticipated that the penultimate galactoside of the linear tetrasaccharide lacto-N-neotetraose (LNnT) can be selectively modified by the I-branching enzyme GCNT2 to install a β1,6-GlcNAc moiety providing an asymmetric pentasaccharide (Fig. 1C). The latter compound has terminal GlcNAc and LacNAc moieties, which can be selectively extended by exploiting the fact that most glycosyltransferases can modify a terminal LacNAc but not a GlcNAc residue. Thus, the β3 antenna of the pentasaccharide can first be elaborated by a panel of glycosyltransferases, and at an appropriate stage of the synthesis, the terminal GlcNAc residue of the β6 arm can be converted into LacNAc by the action of β1,4-galactosyltransferase from bovine milk (GalT1). The newly formed LacNAc motif can then be further extended by various numbers of type 1 and type 2 structures, which in turn can be modified with different forms of fucosylation and/or sialylation to give highly complex, asymmetric, biantennary glycans. The process of installing a branching point using GCNT2 can be repeated on the newly extended β6 arm with subsequent galactosylation, branch extension, and finally selective fucosylation or sialylation to give entry into complex, asymmetric, triantennary glycans (Fig. 1D). The power of this strategy is demonstrated by the synthesis of a library of 60 linear, biantennary, and triantennary HMO structures, which were used to create a glycan microarray. Screening studies with several glycan binding proteins such as a galectin, a microbial toxin and a viral adhesion protein, uncovered that glycan complexity controls binding selectivity in unanticipated manners.

Results and Discussion

Synthesis of Asymmetric Biantennary HMOs.

Lactose, the reducing disaccharide of all HMOs, was modified with the multifunctional anomeric linker 1, which was expected to have many attractive attributes (Fig. 2A; for the synthesis of 1, see SI Appendix, Fig. S1). The N-methylhydroxylamine of 1 can selectively react with the reducing terminus of lactose (2) to provide the β-linked product 3 with retention of the pyranose ring (23). The hydrophobic coumarin moiety was expected to facilitate purification of synthetic intermediates by reverse phase column chromatography. Furthermore, the primary amine should facilitate compound immobilization onto N-hydroxysuccinimide (NHS) ester activated microarray slides for glycan array development (24). It also improves ionization of glycans during analysis by mass spectrometry. Finally, the anomeric linkage is acid labile, allowing its removal to provide reducing sugars.

Fig. 2.

Lactose linker conjugations and enzymatic synthesis of HMOs. (A) Lactose-linker complex. (B) Introducing structural asymmetry. (C) Extended poly-LacNAc β6 branch. (D) Selective fucosylation. Reagents and conditions: a, 0.25 M CH3CO2Na, pH 4.2, 37 °C; b, B3GNT2, UDP-GlcNAc; c, GalT1, UDP-Gal; d, GCNT2, UDP-GlcNAc; e, ST6GAL1, CMP-Neu5Ac; f, FUT1, GDP-Fuc; g, B3GALT5, UDP-Gal; h, FUT3, GDP-Fuc; and i, FUT5, GDP-Fuc.

 

The tetrasaccharide LNnT (4) was readily prepared by the subsequent treatment of 3 with β1,3-N-acetylglucosaminyltransferase 2 (B3GNT2) in the presence of uridine-5′-diphospho (UDP)-GlcNAc and then with GalT1 and UDP-galactose (UDP-Gal; Fig. 2B). As anticipated, the enzyme GCNT2 modified only the penultimate galactoside of 4, resulting in the formation of asymmetric pentasaccharide 5. The site of glycosylation was confirmed by NMR spectroscopy (SI Appendix, Figs. S14–S17), which showed a nuclear Overhauser effect (NOE) between H-1 (δ 4.44) of the β1,6GlcNAc moiety and H-6 and H-6′ (δ 3.81 and δ 3.64) of the internal Gal residue. Next, the LacNAc residue of 5 was sialylated using α2,6-sialyltransferase 1 (ST6GAL1) and cytidine-5′monophospho-N-acetylneuraminic acid (CMP-Neu5Ac) to provide hexasaccharide 6.

The progress of each enzymatic transformation was monitored by MALDI-TOF mass spectrometry (MS) without a need for chemical derivatization. Additional enzyme and sugar nucleotide were added if any starting material was observed. After each step, the product was purified by reverse phase column chromatography on C8 (e.g., SI Appendix, Figs. S11–S13), and the resulting compounds were fully characterized by NMR.

The next stage of synthesis involved elaboration of the β6 antenna of 6 by converting the terminal GlcNAc moiety into LacNAc with GalT1 and UDP-Gal to give 7 (Fig. 2B). Treatment of 7 with B3GNT2 and UDP-GlcNAc resulted in the selective addition of a β1,3-GlcNAc moiety to LacNAc of the β6 antenna to provide glycan 8, and subsequent treatment with GalT1 and UDP-Gal installed a second LacNAc motif to yield 9. The β3 arm was unaffected because the α2,6-sialoside blocks modification by mammalian glycosyltransferases. Finally, an α1,2-fucoside was introduced to the terminal galactoside of 9 using galactoside α2-fucosyltransferase 1 (FUT1), an enzyme that only recognizes terminal type 1 or type 2 structures, to furnish decasaccharide 10 bearing an H2 epitope. The successful preparation of 10 highlights the feasibility of exploiting inherent substrate specificities of glycosyltransferases for the modification of multiantennary glycans in a branch selective manner. Advanced intermediate 9 could also be extended by a type 1 structure through the sequential action of B3GNT2 (→11) and B3GALT5 to give 12 (Fig. 2C). The latter compound was treated with FUT1 to yield dodecasaccharide 13 having an H1 epitope at the terminus of a tri-LacNAc repeat on the β6 arm. It was observed that B3GALT5 can readily galactosylate extended acceptors such as 11 to form a terminal type 1 structure; however, no observable addition occurred when shorter substrates such as glycans 6 or 8 were used.

Selective Fucosylation.

An attractive feature of the motif-based enzymatic synthetic strategy is that advanced intermediates, such as 10 (Fig. 2B), can be modified by a panel of appropriate fucosyltransferases to install various types of blood group antigens, thereby creating considerable structural diversity. For example, mammalian lactosamine α1,3–4 fucosyltransferase 3 (FUT3) and 5 (FUT5) can both produce Lewis structures by adding α1,3- or α1,4-fucoside to type 2 or type 1 structures, respectively. Despite high amino acid homology (91%), FUT5 preferentially forms α1,3- and FUT3 α1,4-fucosides. However, when an acceptor bears an H2 epitope, FUT3 exhibits increased α1,3 reactivity to form a Lewisy (Ley) epitope (25). Taking advantage of these differences in reactivity, the H2 antigen of 10 could selectively be converted into a Ley epitope to give 14 by treatment with FUT3 and guanosine 5′-diphospho-β-L-fucose (GDP-Fuc). Even after a prolonged reaction time and the presence of excess of GDP-Fuc, only one fucosyl residue was added, and an internal Lex moiety was not formed. In contrast, the use of FUT5 resulted in the addition of two fucosides providing a Ley–Lex motif to give glycan 15.

Additional strategies were explored for controlling the site of fucosylation of glycans containing dimeric-LacNAc motifs. It is known that a terminal LacNAc moiety modified by an α2,6-sialoside cannot be fucosylated by FUT3 or FUT5, and therefore, it should be possible to selectively modify internal LacNAc residues. Subsequent removal of the sialoside by an appropriate sialidase would then provide uniquely fucosylated glycans. To demonstrate the feasibility of this strategy, biantennary glycan 16 was prepared by a similar strategy as described for compound 9 (SI Appendix, Fig. S8). Selective sialylation of the terminal galactoside of the β6 arm of 16 by ST6GAL1 provided compound 17 (Fig. 3). The β3 arm was unaffected by this sialyltransferase because the Lex epitope at the β3 arm renders it inactive for modification by mammalian glycosyltransferases. As anticipated, treatment of 17 with FUT3 resulted in site-specific fucosylation of the internal LacNAc residue to give glycan 18. Finally, the sialidase from Arthrobacter ureafaciens cleanly removes the sialoside of 18, providing compound 19.

Fig. 3.

Monosaccharide directing groups for selective Lex installation. Reagents and conditions: a, ST6GAL1, CMP-Neu5Ac; b, FUT3, GDP-Fuc; c, sialidase from Arthrobacter ureafaciens; d, FUT1, GDP-Fuc; and e, microbial α1–2 fucosidase.

 

It was anticipated that by combining inherent substrate specificities of fucosyltransferases with selective cleavage of terminal fucosides by a microbial fucosidase, entry into additional targets bearing a terminal Lex epitope could be achieved. For example, FUT3 preferentially modifies H2 epitopes, and therefore, exposure of 20 to this enzyme resulted in the selective formation of a Ley epitope to give compound 21. The sites of fucosylation were confirmed by NMR spectroscopy using chemical shift and NOE analysis (SI Appendix, Figs. S18–S21). The terminal α1,2-fucoside of 21 could be cleaved without affecting any of the other fucosides by using a microbial fucosidase having α1,2 selectivity resulting in the clean formation of 22. These results demonstrate that unique glycan architectures can be created by combining the inherent regioselectivities of glycosyltransferases with glycosidases that hydrolyze specific glycoepitopes.

Synthesis of Asymmetric Triantennary HMOs.

The final challenge was to expand the methodology to the synthesis of asymmetrical, triantennary glycans such as 28. It was anticipated that the process of installing a second branching point using GCNT2, followed by galactosylation, elaboration with various numbers of LacNAc repeating units, and finally fucosylation or sialylation, could be performed on biantennary glycans to give entry into asymmetric triantennary structures. Thus, starting from advanced intermediate 9, GCNT2 selectively installed a β6-GlcNAc on the internal LacNAc of the β6 arm to furnish decasaccharide 23 (Fig. 4). Treatment of 23 with FUT1 resulted in α1,2-fucosylation of the LacNAc moiety of the middle β3-branch leading to the formation of an H2 epitope while leaving the β6-GlcNAc branching moiety unmodified (compound 24). The terminal fucoside (H2 antigen) prevented any further extension of the middle β3 branch with LacNAc repeating units, and therefore, the β6 arm could be exclusively elongated by the sequential application of GalT1 (→25), B3GNT2 (→26), and GalT1 to provide tetradecasaccharide 27. Finally, fucosylation of 27 with FUT1 furnished asymmetric pentadecasaccharide 28, which is endowed with two H2 epitopes and a 6′-sialyl-LacNAc motif.

Fig. 4.

Synthesis of an asymmetric, triantennary HMO. Reagents and conditions: a, GCNT2, UDP-GlcNAc; b, FUT1, GDP-Fuc; c, GalT1, UDP-Gal; and d, B3GNT2, UDP-GlcNAc.

 

Construction of an HMO Glycan Microarray.

To demonstrate the versatility of the methodology, a library of 60 linear, biantennary, and triantennary HMOs was prepared (Fig. 5; for synthesis, see Figs. 2–4 and SI Appendix, Figs. S2–S9), which were printed onto NHS ester activated glass slides to create an HMO glycan microarray. The resulting slides were examined for binding to the plant lectins Sambucus nigra agglutinin (SNA), Ulex europaeus agglutinin I (UEA), and Aleuria aurantia (AAL), which recognize α2,6-sialosides; α1,2-fucosides; and α1,2- α1,3-, and α1–6 fucosides, respectively. These studies confirmed spot integrity and proper substrate deposition (SI Appendix, Fig. S22).

Fig. 5.

HMO library members. The compounds are organized according to an increase in complexity. B, biantennary glycan; L, linear glycan; and T, triantennary glycan. See SI Appendix, Table S2, for correlation of library identifier with compound synthesis number.

 

We next examined recognition of the glycans on the microarray by a number of glycan binding proteins whose activity may be modulated by HMOs including Galectin 9 (Gal-9) (26), the AB5 toxin of Vibrio cholera, and a rotaviral adhesion protein (Fig. 6). Galectins are a family of β-galactoside binding proteins that are involved in a number of physiological and disease processes including immune modulation (27). Previous studies have shown that Gal-9 can bind type 1 and type 2 LacNAc structures with a preference for extended chains (28, 29). Furthermore, the presence of a terminal α2,3-sialoside or α1,3/4-fucoside abolishes binding. HMOs on the array that exhibited moderate to strong responsiveness to Gal-9 all possessed an extended LacNAc motif on the β6 arm, which probably is the main site of binding (Fig. 6A). The presence of a terminal type 1 structure resulted in substantially stronger binding (B23 vs. B22). An α2,6-sialoside capping a trimeric LacNAc moiety at the β6 arm also increased responsiveness (B26 vs. B22), whereas a similar modification of dimeric LacNAc abolished binding (B20 vs. B18). Terminal α1,2-fucosylation on the β6 arm provided an H-antigen that reduced or abolished binding (B19 vs. B18, B25 vs. B22, and B24 vs. B23). Other forms of fucosylation of the β6 arm were also not tolerated for Gal-9 binding. The glycan epitope of the β3 antenna greatly influenced binding of an extended LacNAc motif on the β6 arm. For example, the presence of an H2 epitope on the β3 arm was tolerated (B18, B23, and B24), whereas an α2,6-sialoside abolished binding (compared with B6, B12, and B14, respectively). A similar result was obtained with the triantennary HMOs where binding was observed when the bottom β3 antenna bears an H2 epitope but is not detected when this site contained an α2,6-sialoside (T5 vs. T2). Furthermore, a Lex moiety on the β3 arm rather than an H2 was also detrimental for binding (B31 vs. B18). Even sialylation of the β3 arm of compound B26 to give B27 resulted in a loss of interaction.

Fig. 6.

Screening of the HMO library. Microarray results of the HMO library at 100 µM. (A) Galectin-9 (3 µg⋅mL−1). (B) V. cholera toxin subunit B5 (100 µg⋅mL−1). (C) Porcine rotaviral strain CRW-8 VP8* (200 µg⋅mL−1). RFU, relative fluorescence units.

 

Next, binding properties of the B5 subunit of the AB5 toxin V. cholera were explored (Fig. 6B). This pentameric protein facilitates cell adhesion and permits endocytosis of the toxic A subunit. It recognizes with high affinity the ganglioside GM1 (30); however, recent studies have demonstrated that it can also bind fucosylated glycans of glycoproteins (31). The two compounds on the microarray that showed the greatest responsiveness have asymmetrical architectures bearing Ley epitopes at the β3 and β6 branch (B28 and B29). Compounds that displayed only one Ley epitope (B8 and B9) showed no binding. Even removal of only a single fucosyl residue to give Lex on the β3 antenna, while maintaining the presence of a β6 Ley epitope, substantially reduced binding (B34 and B36). These observations highlight that the complex architecture of HMOs modulate binding and indicate that a bivalent interaction of the toxin with Ley at the β3 and β6 arm results in increased avidity.

As a third class of glycan binding proteins that interacts with HMOs, we explored the binding selectivity of an adhesion protein from a rotavirus. These viruses cause viral gastroenteritis and diarrhea in infants and the young of various animal species. Infectivity requires that the surface viral spike protein VP4 be cleaved into VP5* and VP8* fragments, where the latter is responsible for cellular adhesion (32). The porcine strain CRW-8 has been termed “sialidase sensitive” because infectivity requires sialic acid for adhesion and subsequent infection. Recently, it was demonstrated that VP8* of CRW-8 recognizes the glycolipid aceramido-GM3, which is composed of an α2,3-sialoside linkage to lactose (33, 34). The HMO microarray is sparsely populated with α2,3-sialosides, which showed no interaction with VP8* (Fig. 6C). The compounds that exhibited strong responsiveness (B2, B6, B11, T1, and T2) have asymmetric architectures displaying a α2,6-sialylLacNAc moiety at the β3 antenna and a terminal type 2 LacNAc residue on the β6 branch. Compounds that lack the latter residue, such as B3, B4, B5, B7, B8, B10, and B13, but maintain an α2,6-sialylLacNAc at the β3 arm were not recognized by the protein. A terminal type 1 structure, such as in compound B12, was also not tolerated (compared with B11). Triantennary HMOs that display a terminal α2,6-sialylLacNAc on the lower β3 arm and terminal LacNAc motifs on the upper β6 arm also showed strong responsiveness to VP8* (T1 and T2). In these cases, the presence of an H2 epitope on the middle β3 arm did not interfere with binding, whereas an H2 moiety on the lower and middle β3 arms abolished any interaction with the protein (T4 and T5). These results suggest that high binding avidity is accomplished through heteromultivalency in which a bivalent interaction is established with two different binding sites having different ligand requirements.

Conclusion

The ultimate challenge in infant nutrition is to make formula derived from bovine milk with increased similarity to human milk in terms of composition and functionality. HMOs represent a broad pool of glycan structures that are mostly absent in bovine milk but have a wide range of antimicrobial effects against pathogens that cause diarrhea, as well as regulating the immune system and intestinal physiology. Supplementation with key human milk glycans is beginning to take root as the European Food Safety Authority reported that 2′-O-fucosyllactose is safe to be used as a human food additive (35). There is also a realization that HMOs have potential for medical purposes such as lowering the risk of developing necrotizing enterocolitis in neonates (9). Despite these promises, the relationship between HMO structures and biological activity remains largely unknown due to a lack of well-defined compounds, especially those that have complex architectures. Cummings and coworkers developed a glycan microarray by fractionation of human milk by multidimensional chromatography followed by chemical modification for immobilization to glass slides (36, 37). Despite attractive features, such a shotgun approach suffers from difficulties of structure identification of active compounds, false positive hits due to insufficient compound purification, and problems in follow-up studies due to lack of sufficient quantities of material. A number of HMOs have been synthesized (14⇓⇓⇓⇓⇓⇓⇓–22); however, the methods used can only provide molecules with relatively simple architectures. The synthetic strategy described here addresses these deficiencies and can provide entry into a wide array of highly complex HMOs. Strategically desymmetrizing selected oligosaccharides by installing a branching point through the action of the GCNT2 enzyme created the opportunity to systematically build complex, asymmetric HMOs. Exploiting inherent substrate specificities of glycosyltransferases and hydrolases yielded a library representing compounds of enormous structural diversity. This current synthetic strategy is different from the previously reported approach for preparing asymmetric N-glycans (38), which relied on a chemically prepared, orthogonally protected, core pentasaccharide. The current methodology was used to prepare a library of 60 linear, biantennary, and triantennary glycans, which were used for the development of a microarray. Binding studies with three glycan binding proteins revealed that the topology of HMOs greatly influences recognition, possibly through homomultivalent and heteromultivalent interactions or negative allosteric modulation by neighboring glycan branches. It is widely accepted that terminal oligosaccharide motifs of complex glycans mediate biological recognition (39, 40); however, the results presented here show that complex glycan architecture modulates binding in unanticipated manners.

Materials and Methods

Full experimental details and characterization of the compounds are given in SI Appendix.

General Materials and Methods for Enzymatic Synthesis.

Enzymatic reactions were incubated overnight at 37 °C with gentle shaking. Reaction progress was monitored by MALDI-TOF MS using 2,5-dihydroxybenzoic acid (DHB) as a matrix. If starting material was detected after 18 h, a second portion of enzyme was added. When no starting material was detected, enzymes and BSA were removed by centrifugation using a Nanosep Omega ultrafiltration device (10 kDa cut off). The filtrate was lyophilized, and products were purified by reverse-phase HPLC (SI Appendix). GalT1 from bovine milk was purchased from Sigma. Sialidase from Arthrobacter ureafaciens was purchased from Roche, and 1,2-α-L-fucosidase (microbial) was purchased from Megazyme.

Procedure for the Installation of β1,3 GlcNAc (8, 11, 26).

HMO (7, 9 or 25) and UDP-GlcNAc (1.5 eq per GlcNAc added) were dissolved at a final HMO concentration of 10 mM in a Hepes buffer (50 mM, pH 7.3) containing KCl (25 mM), MgCl2 (2 mM), and DTT (1 mM). To this mixture, calf intestine alkaline phosphatase (CIAP, 10 U μL−1) and B3GNT2 (8.3 μg per μmol HMO) were added. Following purification, the respective products (8, 87%; 11, 82%; and 26, 85%) were obtained as white solids.

Procedure for the Installation of Branching β1,6 GlcNAc (5, 23).

HMO (4 or 9) and UDP-GlcNAc (1.5 eq per GlcNAc added) were dissolved at a final HMO concentration of 10 mM in a Mes buffer (50 mM, pH 7.0) containing Na2EDTA (10 mM). To this mixture, CIAP (10 U μL−1) and GCNT2 (7.5 μg per μmol HMO) were added. Following purification, the respective products (5, 78%, and 23, 74%) were obtained as white solids.

Procedure for the Installation of β1,4 Gal to Form Type II LacNAc Moieties (7, 9, 25, 27).

HMO (6, 8, 24, or 26) and UDP-Gal (1.5 eq per Gal added) were dissolved at a final HMO concentration of 10 mM in a Tris buffer (50 mM, pH 7.3) containing MnCl2 (10 mM) and BSA (0.1% wt/wt). To this mixture, CIAP (10 U μL−1) and GalT1 (5 μg per μmol HMO) were added. Following purification, the respective products (7, 90%; 9, 92%; 25, 88%; and 27, 85%) were obtained as white solids.

Procedure for the Installation of β1,3 Gal to Form Type I LacNAc Moieties (12).

HMO 11 and UDP-Gal (1.5 eq per Gal added) were dissolved at a final HMO concentration of 10 mM in a sodium cacodylate buffer (150 mM, pH 7.5) containing MnCl2 (10 mM) and BSA (0.1% wt/wt). To this mixture, CIAP (10 U μL−1) and B3GALT5 (8.2 μg per μmol HMO) were added. Following purification, compound 12 (80%) was obtained as a white solid.

Procedure for the Installation of α1,2 Fuc (10, 13, 20, 24, 28).

HMO (9, 12, 16, 23, or 27) and GDP-Fuc (1.5 eq per Fuc added) were dissolved at a final HMO concentration of 10 mM in a Tris buffer (50 mM, pH 7.3) containing MnCl2 (10 mM). To this mixture, CIAP (10 U μL−1) and FUT1 (10 μg per μmol HMO) were added. Following purification, the respective products (10, 90%; 13, 93%; 20, 88%; 24, 87%; and 28, 90%) were obtained as white solids.

Procedure for the Installation of α1,3 Fuc Using FUT3 (14, 18, 21).

HMO (10, 17, or 20) and GDP-Fuc (1.5 eq per Fuc added) were dissolved at a final HMO concentration of 10 mM in a Tris buffer (50 mM, pH 7.3) containing MnCl2 (10 mM). To this mixture, CIAP (10 U μL−1) and FUT3 (10 μg per μmol HMO) were added. Following purification, the respective products (14, 86%; 18, 85%; and 21, 90%) were obtained as white solids.

Procedure for the Installation of α1,3 Fuc Using FUT5 (15).

HMO 10 and GDP-Fuc (1.5 eq per Fuc added) were dissolved at a final HMO concentration of 10 mM in a Tris buffer (50 mM, pH 7.3) containing MnCl2 (10 mM). To this mixture, CIAP (10 U μL−1) and FUT5 (10 μg per μmol HMO) were added. Following purification, compound 15 (81%) was obtained as a white solid.

Procedure for the Installation of Terminal α2,6 Neu5Ac (6, 17).

HMO (5 or 16) and CMP-Neu5Ac (1.5 eq per Neu5Ac) were dissolved at a final HMO concentration of 10 mM in a sodium cacodylate buffer (100 mM, pH 6.5) containing BSA (0.1% wt/wt). To this mixture, CIAP (10 U μL−1) and ST6GAL1 (4.4 μg per μmol HMO) were added. Following purification, the respective products (6, 96%, and 17, 89%) were obtained as white solids.

Acknowledgments

This research was supported by the National Institute of General Medical Sciences (R01GM090269 and P01GM107012 to G.-J.B. and P41GM103390 to K.W.M.); the National Heart, Lung, and Blood Institute (P01HL107150 to G.-J.B.); and the National Cancer Institute (F31CA180478 to A.R.P.) from the US National Institutes of Health (NIH). The research benefitted from instrumentation provided by NIH Grant S10RR027097. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.

Footnotes

  • ↵1To whom correspondence should be addressed. Email: g.j.p.h.boons@uu.nl.

  • Author contributions: A.R.P., L.L., C.J.C., M.A.W., K.W.M., and G.-J.B. designed research; A.R.P., L.L., C.J.C., M.A.W., S.W., Z.G., and L.M. performed research; S.W., Z.G., and L.M. contributed new reagents/analytic tools; A.R.P., L.L., C.J.C., M.A.W., and G.-J.B. analyzed data; and A.R.P. and G.-J.B. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1701785114/-/DCSupplemental.

 

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